Stem-loop rno-mir-383

Accession

MI0003478

Description

Rattus norvegicus rno-mir-383 precursor miRNA

Gene family

MIPF0000137; mir-383

Literature search

16 open access papers mention rno-mir-383
(45 sentences)

Sequence

52488 reads, 965 reads per million, 293 experiments

uccuCAGAUCAGAAGGUGACUGUGGcuuuggguggauauuaaucagCCACAGCACUGCCUGGUCAGAaagagca
...((.((((((..((((.((((((((...(((........)))))))))))))))..)))))).)).......

Structure

----ucc  A      AA    A        uug   gga 
       uC GAUCAG  GGUG CUGUGGcu   ggu   u
       || ||||||  |||| ||||||||   |||    
       AG CUGGUC  UCAC GACACCga   cua   a
acgagaa  A      CG    -        ---   auu 

Annotation confidence High

Genome context

chr16: 57519675-57519748 [+]

Mature rno-miR-383-5p

• Accession: MIMAT0003114
• Description: Rattus norvegicus rno-miR-383-5p mature miRNA
• Sequence: 5 - CAGAUCAGAAGGUGACUGUGG - 25
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-383-3p

• Accession: MIMAT0017197
• Description: Rattus norvegicus rno-miR-383-3p mature miRNA
• Sequence: 47 - CCACAGCACUGCCUGGUCAGA - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267