miRBase entry: rno-mir-412

Stem-loop rno-mir-412


Accession
MI0003488
Description
Rattus norvegicus rno-mir-412 precursor miRNA
Gene family
MIPF0000192; mir-412

Literature search
2 open access papers mention rno-mir-412
(3 sentences)

Sequence

5357 reads, 26 reads per million, 212 experiments
gggacggaUGGUCGACCAGCUGGAAAGUaauuguuucuaauguaCUUCACCUGGUCCACUAGCCGUcggu
..(((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)))))...

Structure
-gg     a    C      C   AA    -    u 
   gacgg UGGU GACCAG UGG  AGUa auug u
   ||||| |||| |||||| |||  |||| ||||  
   cUGCC AUCA CUGGUC ACU  UCau uaau u
ugg     G    C      C   --    g    c 


Annotation confidence High
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Genome context
chr6: 133893571-133893640 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-412
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-412-5p

Accession MIMAT0017204
Description Rattus norvegicus rno-miR-412-5p mature miRNA
Sequence 9 - UGGUCGACCAGCUGGAAAGU - 28
Evidence experimental
SOLiD [2]

Mature rno-miR-412-3p

Accession MIMAT0003124
Description Rattus norvegicus rno-miR-412-3p mature miRNA
Sequence 45 - CUUCACCUGGUCCACUAGCCGU - 66
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267