Stem-loop rno-mir-412

Accession

MI0003488

Description

Rattus norvegicus rno-mir-412 precursor miRNA

Literature search

2 open access papers mention rno-mir-412
(3 sentences)

Sequence

5357 reads, 9 reads per million, 212 experiments

gggacggaUGGUCGACCAGCUGGAAAGUaauuguuucuaauguaCUUCACCUGGUCCACUAGCCGUcggu
..(((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)))))...

Structure

-gg     a    C      C   AA    -    u 
   gacgg UGGU GACCAG UGG  AGUa auug u
   ||||| |||| |||||| |||  |||| ||||  
   cUGCC AUCA CUGGUC ACU  UCau uaau u
ugg     G    C      C   --    g    c 

Annotation confidence Medium

Genome context

chr6: 133893571-133893640 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-412

Mature rno-miR-412-5p

• Accession: MIMAT0017204
• Description: Rattus norvegicus rno-miR-412-5p mature miRNA
• Sequence: 9 - UGGUCGACCAGCUGGAAAGU - 28
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-412-3p

• Accession: MIMAT0003124
• Description: Rattus norvegicus rno-miR-412-3p mature miRNA
• Sequence: 45 - CUUCACCUGGUCCACUAGCCGU - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267