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miRBase |
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Stem-loop sequence osa-MIR535 |
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Accession | MI0003505 (change log) | ||||
Description | Oryza sativa miR535 stem-loop | ||||
Gene family | MIPF0000136; MIR535 | ||||
Literature search |
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20 open access papers mention osa-MIR535 | ||||
Stem-loop |
a c ----- u a u 5' ggcggugacaacg gagagagcacgc ggugcg gcgg c cgg g ||||||||||||| |||||||||||| |||||| |||| | ||| 3' ccgucacuguugc cucuuucgugcg ccaugc cgcc g gcc a c u ggcgg c - g |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence osa-miR535-5p |
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Accession | MIMAT0003142 |
Previous IDs | osa-miR535 |
Sequence |
6 - ugacaacgagagagagcacgc - 26 |
Deep sequencing | 5823 reads, 2 experiments |
Evidence | experimental; cloned [1] |
Database links |
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Mature sequence osa-miR535-3p |
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Accession | MIMAT0022927 |
Sequence |
71 - gugcuuucucccguugucacu - 91 |
Deep sequencing | 19 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
PMID:16146523
"Cloning and characterization of micro-RNAs from moss"
Plant J. 43:837-848(2005).
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2 |
PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"
PLoS Pathog. 7:e1002176(2011).
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