Stem-loop sequence osa-MIR535

Accession

MI0003505 (change log)

Description

Oryza sativa miR535 stem-loop

Gene family

MIPF0000136; MIR535

Literature search

20 open access papers mention osa-MIR535
(32 sentences)

Stem-loop

                a            c      -----    u a   u 
5' ggcggugacaacg gagagagcacgc ggugcg     gcgg c cgg g
   ||||||||||||| |||||||||||| ||||||     |||| | |||  
3' ccgucacuguugc cucuuucgugcg ccaugc     cgcc g gcc a
                c            u      ggcgg    c -   g 

Deep sequencing

5845 reads, 3.7e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr11: 16290530-16290623 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0003505

Mature sequence osa-miR535-5p

• Accession: MIMAT0003142
• Previous IDs: osa-miR535
• Sequence: 6 - ugacaacgagagagagcacgc - 26
• Deep sequencing: 5823 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000464D75_39947

Mature sequence osa-miR535-3p

• Accession: MIMAT0022927
• Sequence: 71 - gugcuuucucccguugucacu - 91
• Deep sequencing: 19 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000338E10_39947

References

1. PMID:16146523 "Cloning and characterization of micro-RNAs from moss" Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC Plant J. 43:837-848(2005).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).