Stem-loop sequence mmu-mir-487b

Accession

MI0003534 (change log)

Symbol

MGI:Mir487b

Description

Mus musculus miR-487b stem-loop

Gene family

MIPF0000018; mir-154

Literature search

17 open access papers mention mmu-mir-487b
(59 sentences)

Stem-loop

   u      ug        uuau      c uc    - uuc 
5'  gguacu  gagagugg    cccugu c  uucg c   a
    ||||||  ||||||||    |||||| |  |||| |   c
3'  cuauga  uuuucacc    gggaca g  aagc g   u
   a      cu        uacu      u cu    c uac 

Deep sequencing

22519 reads, 125 reads per million, 75 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109727333-109727414 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-487b

• mmu-mir-495: chr12: 109718754-109718816 [+]
• mmu-mir-667: chr12: 109720006-109720097 [+]
• mmu-mir-376c: chr12: 109722718-109722803 [+]
• mmu-mir-654: chr12: 109723218-109723301 [+]
• mmu-mir-376b: chr12: 109723458-109723539 [+]
• mmu-mir-376a: chr12: 109723781-109723848 [+]
• mmu-mir-300: chr12: 109724313-109724391 [+]
• mmu-mir-381: chr12: 109726822-109726896 [+]
• mmu-mir-487b: chr12: 109727333-109727414 [+]
• mmu-mir-539: chr12: 109728129-109728202 [+]
• mmu-mir-544: chr12: 109729325-109729402 [+]
• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]

Database links

• EntrezGene:Mir487b
• MGI:Mir487b
• RNAcentral:URS000075EB6F_10090
• miRBase Tracker:MI0003534

Mature sequence mmu-miR-487b-5p

• Accession: MIMAT0017216
• Previous IDs: mmu-miR-487b*
• Sequence: 15 - ugguuaucccuguccucuucg - 35
• Deep sequencing: 75 reads, 25 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS00000F0AF5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-487b-5p
  • miRDB:mmu-miR-487b-5p

Mature sequence mmu-miR-487b-3p

• Accession: MIMAT0003184
• Previous IDs: mmu-miR-487b
• Sequence: 50 - aaucguacagggucauccacuu - 71
• Deep sequencing: 22417 reads, 73 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000015B295_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-487b-3p
  • miRDB:mmu-miR-487b-3p
  • microrna.org:mmu-miR-487b-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).