Stem-loop sequence mmu-mir-369

Accession

MI0003535 (change log)

Symbol

MGI:Mir369

Description

Mus musculus miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

25 open access papers mention mmu-mir-369
(107 sentences)

Stem-loop

         u  ag               ua      cuu g 
5' gguacu ga  ggagaucgaccgugu  uauucg   g c
   |||||| ||  |||||||||||||||  ||||||   | u
3' cuauga cu  uuucuaguugguaca  auaagc   c g
         -  cu               ua      -uu a 

Deep sequencing

97901 reads, 335 reads per million, 91 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109743418-109743496 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000113366 ; Mirg-004; intron 4

  OTTMUST00000113368 ; Mirg-005; intron 5

  OTTMUST00000114051 ; Mirg-010; intron 9

  ENSMUST00000182268 ; Mirg-004; intron 4

  ENSMUST00000183116 ; Mirg-005; intron 5

  ENSMUST00000182185 ; Mirg-010; intron 9

Clustered miRNAs

< 10kb from mmu-mir-369

• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]
• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]
• mmu-mir-3072: chr12: 109747878-109747960 [+]

Database links

• EntrezGene:Mir369
• MGI:Mir369
• RNAcentral:URS000072E415_10090
• miRBase Tracker:MI0003535

Mature sequence mmu-miR-369-5p

• Accession: MIMAT0003185
• Sequence: 14 - agaucgaccguguuauauucgc - 35
• Deep sequencing: 19081 reads, 77 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00002A71AD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-369-5p
  • miRDB:mmu-miR-369-5p
  • microrna.org:mmu-miR-369-5p

Mature sequence mmu-miR-369-3p

• Accession: MIMAT0003186
• Sequence: 49 - aauaauacaugguugaucuuu - 69
• Deep sequencing: 78814 reads, 88 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000442B0D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-369-3p
  • miRDB:mmu-miR-369-3p
  • microrna.org:mmu-miR-369-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).