miRBase entry: rno-mir-493

Stem-loop rno-mir-493


Accession
MI0003540
Description
Rattus norvegicus rno-mir-493 precursor miRNA
Gene family
MIPF0000230; mir-493

Literature search
7 open access papers mention rno-mir-493
(11 sentences)

Sequence

9951 reads, 36 reads per million, 272 experiments
ggccuccagggccUUGUACAUGGUAGGCUUUCAUUcauuguuugcacauucggUGAAGGUCUACUGUGUGCCAGgcccugugcc
(((...((((((((.((((((((((((((((((((...(((....)))...)))))))))))))))))))).)))))))).)))

Structure
   cuc        U                    cau   u 
ggc   cagggccU GUACAUGGUAGGCUUUCAUU   ugu u
|||   |||||||| ||||||||||||||||||||   |||  
ccg   gucccgGA CGUGUGUCAUCUGGAAGUgg   aca g
   --u        C                    cuu   c 


Annotation confidence High
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Genome context
chr6: 133699509-133699592 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-493
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-493-5p

Accession MIMAT0017217
Description Rattus norvegicus rno-miR-493-5p mature miRNA
Sequence 14 - UUGUACAUGGUAGGCUUUCAUU - 35
Evidence experimental
SOLiD [2]

Mature rno-miR-493-3p

Accession MIMAT0003191
Description Rattus norvegicus rno-miR-493-3p mature miRNA
Sequence 54 - UGAAGGUCUACUGUGUGCCAG - 74
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267