miRBase entry: rno-mir-494

Stem-loop rno-mir-494


Accession
MI0003542
Description
Rattus norvegicus rno-mir-494 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
23 open access papers mention rno-mir-494
(349 sentences)

Sequence

3457 reads, 282 reads per million, 302 experiments
ugauacuugaaggagAGGUUGUCCGUGUUGUCUUCUCuuuauuuaugaUGAAACAUACACGGGAAACCUCUuuuuuaguauca
(((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).)))))))))))))))))))

Structure
       u            G       -   C   -  uuu 
ugauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
||||||| |||||||||||| ||||||| ||| ||| ||   u
acuauga uuuuuUCUCCAA GGGCACA ACA AAG ag   u
       -            A       U   -   U  uau 


Annotation confidence High
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Genome context
chr6: 133864370-133864452 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from rno-mir-494
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-494-5p

Accession MIMAT0017218
Description Rattus norvegicus rno-miR-494-5p mature miRNA
Sequence 16 - AGGUUGUCCGUGUUGUCUUCUC - 37
Evidence experimental
SOLiD [2]

Mature rno-miR-494-3p

Accession MIMAT0003193
Description Rattus norvegicus rno-miR-494-3p mature miRNA
Sequence 49 - UGAAACAUACACGGGAAACCUCU - 71
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267