Stem-loop rno-mir-376b

Accession

MI0003544

Description

Rattus norvegicus rno-mir-376b precursor miRNA

Literature search

13 open access papers mention rno-mir-376b
(98 sentences)

Sequence

39466 reads, 40 reads per million, 372 experiments

uuugguauuuaaaagGUGGAUAUUCCUUCUAUGGUUAcgugcuuccuggauaAUCAUAGAGGAACAUCCACUUuuucaguaucaaa
.((((((((.(((((((((((.(((((.((((((((((..........).)))))))))))))).))))))))))).)))))))).

Structure

u        u           A     U         - gugc 
 uugguauu aaaagGUGGAU UUCCU CUAUGGUUA c    u
 |||||||| ||||||||||| ||||| ||||||||| |     
 aacuauga uuuUUCACCUA AAGGA GAUACUAau g    u
a        c           C     -         a gucc 

Annotation confidence Medium

Genome context

chr6: 133873095-133873180 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-376b

Mature rno-miR-376b-5p

• Accession: MIMAT0003195
• Description: Rattus norvegicus rno-miR-376b-5p mature miRNA
• Sequence: 16 - GUGGAUAUUCCUUCUAUGGUUA - 37
• Evidence: experimental ; cloned [2-3], SOLiD [4]

Mature rno-miR-376b-3p

• Accession: MIMAT0003196
• Description: Rattus norvegicus rno-miR-376b-3p mature miRNA
• Sequence: 53 - AUCAUAGAGGAACAUCCACUU - 73
• Evidence: experimental ; cloned [2], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267