miRBase entry: rno-mir-381

Stem-loop rno-mir-381


Accession
MI0003546
Description
Rattus norvegicus rno-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
13 open access papers mention rno-mir-381
(91 sentences)

Sequence

24596 reads, 39 reads per million, 358 experiments
AGCGAGGUUGCCCUUUGUAUAUucgguuuauugacaugggaUAUACAAGGGCAAGCUCUcu
((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).))

Structure
  C   G        U        g  uua 
AG GAG UUGCCCUU GUAUAUuc gu   u
|| ||| |||||||| |||||||| ||    
uc CUC AACGGGAA CAUAUagg ua   u
  U   G        -        g  cag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr6: 133876615-133876675 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from rno-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-381-5p

Accession MIMAT0017220
Description Rattus norvegicus rno-miR-381-5p mature miRNA
Sequence 1 - AGCGAGGUUGCCCUUUGUAUAU - 22
Evidence experimental
SOLiD [2]

Mature rno-miR-381-3p

Accession MIMAT0003199
Description Rattus norvegicus rno-miR-381-3p mature miRNA
Sequence 42 - UAUACAAGGGCAAGCUCU - 59
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267