miRBase entry: rno-mir-487b

Stem-loop rno-mir-487b


Accession
MI0003547
Description
Rattus norvegicus rno-mir-487b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
6 open access papers mention rno-mir-487b
(72 sentences)

Sequence

94369 reads, 143 reads per million, 392 experiments
ugguacuuggagAGUGGUUAUCCCUGUCCUCUUCGcuucacuuaugccgAAUCGUACAGGGUCAUCCACUUuuucaguauca
(((((((.(((((((((....((((((.(..(((((.........).))))..).))))))....))))))))).)))))))

Structure
       u         UUAU      C UC    - uuc 
ugguacu ggagAGUGG    CCCUGU C  UUCG c   a
||||||| |||||||||    |||||| |  |||| |   c
acuauga uuuUUCACC    GGGACA G  AAgc g   u
       c         UACU      U CU    c uau 


Annotation confidence High
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Genome context
chr6: 133877124-133877205 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from rno-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-487b-5p

Accession MIMAT0017221
Description Rattus norvegicus rno-miR-487b-5p mature miRNA
Sequence 13 - AGUGGUUAUCCCUGUCCUCUUCG - 35
Evidence experimental
SOLiD [2]

Mature rno-miR-487b-3p

Accession MIMAT0003200
Description Rattus norvegicus rno-miR-487b-3p mature miRNA
Sequence 50 - AAUCGUACAGGGUCAUCCACUU - 71
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267