miRBase entry: rno-mir-485

Stem-loop rno-mir-485


Accession
MI0003549
Description
Rattus norvegicus rno-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485

Literature search
8 open access papers mention rno-mir-485
(47 sentences)

Sequence

55880 reads, 11404 reads per million, 381 experiments
gauacuuggagAGAGGCUGGCCGUGAUGAAUUCgauucaucuaaacgaguCAUACACGGCUCUCCUCUCUUCuaguguc
((((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).))))))

Structure
      u         CU       -    A    auuc 
gauacu ggagAGAGG  GGCCGUG AUGA UUCg    a
|||||| |||||||||  ||||||| |||| ||||    u
cuguga CUUCUCUCC  UCGGCAC UACu gagc    c
      u         UC       A    -    aaau 


Annotation confidence High
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Genome context
chr6: 133885299-133885377 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from rno-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-485-5p

Accession MIMAT0003203
Description Rattus norvegicus rno-miR-485-5p mature miRNA
Sequence 12 - AGAGGCUGGCCGUGAUGAAUUC - 33
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-485-3p

Accession MIMAT0017222
Description Rattus norvegicus rno-miR-485-3p mature miRNA
Sequence 51 - CAUACACGGCUCUCCUCUCUUC - 72
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267