miRBase entry: rno-mir-409a

Stem-loop rno-mir-409a


Accession
MI0003550
Description
Rattus norvegicus rno-mir-409a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
9 open access papers mention rno-mir-409a
(18 sentences)

Sequence

216596 reads, 263 reads per million, 450 experiments
gguacucggagagAGGUUACCCGAGCAACUUUGCAUcuggaggacgAAUGUUGCUCGGUGAACCCCuuuucgguauc
(((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))))

Structure
     u       A    AC         -    - AUc 
gguac cggagag GGUU  CCGAGCAAC UUUG C   u
||||| ||||||| ||||  ||||||||| |||| |    
cuaug gcuuuuC CCAA  GGCUCGUUG AAgc g   g
     -       C    GU         U    a gag 


Annotation confidence High
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Genome context
chr6: 133893419-133893495 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-409a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-409a-5p

Accession MIMAT0003204
Description Rattus norvegicus rno-miR-409a-5p mature miRNA
Sequence 14 - AGGUUACCCGAGCAACUUUGCAU - 36
Evidence experimental
SOLiD [2]

Mature rno-miR-409a-3p

Accession MIMAT0003205
Description Rattus norvegicus rno-miR-409a-3p mature miRNA
Sequence 47 - AAUGUUGCUCGGUGAACCCC - 66
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267