miRBase entry: rno-mir-369

Stem-loop rno-mir-369


Accession
MI0003551
Description
Rattus norvegicus rno-mir-369 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
8 open access papers mention rno-mir-369
(12 sentences)

Sequence

132609 reads, 182 reads per million, 419 experiments
gguacuugaagggAGAUCGACCGUGUUAUAUUCGCuuagcugacuucgAAUAAUACAUGGUUGAUCUUUucucaguauc
((((((.((.((((((((((((((((..((((((...((....)).))))))..)))))))))))))))).))))))))

Structure
      u  a                UA      Cuu  c 
gguacu ga gggAGAUCGACCGUGU  UAUUCG   ag u
|||||| || ||||||||||||||||  ||||||   ||  
cuauga cu uUUUCUAGUUGGUACA  AUAAgc   uc g
      -  c                UA      --u  a 


Annotation confidence High
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Genome context
chr6: 133893693-133893771 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-369
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-369-5p

Accession MIMAT0003206
Description Rattus norvegicus rno-miR-369-5p mature miRNA
Sequence 14 - AGAUCGACCGUGUUAUAUUCGC - 35
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-369-3p

Accession MIMAT0003207
Description Rattus norvegicus rno-miR-369-3p mature miRNA
Sequence 49 - AAUAAUACAUGGUUGAUCUUU - 69
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267