miRBase entry: rno-mir-363

Stem-loop rno-mir-363


Accession
MI0003553
Description
Rattus norvegicus rno-mir-363 precursor miRNA
Gene family
MIPF0000138; mir-363

Literature search
9 open access papers mention rno-mir-363
(25 sentences)

Sequence

18976 reads, 75 reads per million, 460 experiments
uuuugcuguuauCGGGUGGAUCACGAUGCAAUUUugauuagaguaaugggagagaAAUUGCACGGUAUCCAUCUGUaaaccgcagga
((((((.(((..(((((((((..((.(((((((((..((..........))..)))))))))))..)))))))))..))).))))))

Structure
      u   au         CA  A         ga  agag 
uuuugc guu  CGGGUGGAU  CG UGCAAUUUu  uu    u
|||||| |||  |||||||||  || |||||||||  ||     
aggacg caa  GUCUACCUA  GC ACGUUAAag  ag    a
      c   aU         UG  -         ag  ggua 


Annotation confidence Not enough data
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
chrX: 140117098-140117184 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-363
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-363-5p

Accession MIMAT0003209
Description Rattus norvegicus rno-miR-363-5p mature miRNA
Sequence 13 - CGGGUGGAUCACGAUGCAAUUU - 34
Evidence experimental
SOLiD [3]

Mature rno-miR-363-3p

Accession MIMAT0003210
Description Rattus norvegicus rno-miR-363-3p mature miRNA
Sequence 56 - AAUUGCACGGUAUCCAUCUGU - 76
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267