miRBase entry: hsa-mir-548b

Stem-loop hsa-mir-548b


Accession
MI0003596
Symbol
HGNC: MIR548B
Description
Homo sapiens hsa-mir-548b precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
47 open access papers mention hsa-mir-548b
(157 sentences)

Sequence

12970 reads, 236 reads per million, 78 experiments
cagacuauauauuuagguuggcgcAAAAGUAAUUGUGGUUUUGGCCuuuauuuucaauggCAAGAACCUCAGUUGCUUUUGUgccaaccuaauacuu
............(((((((((((((((((((((((.((((((.(((............))).)))))).))))))))))))))))))))))).....

Structure
cagacuauauau                       U      G   uuuau 
            uuagguuggcgcAAAAGUAAUUG GGUUUU GCC     u
            ||||||||||||||||||||||| |||||| |||      
            aauccaaccgUGUUUUCGUUGAC CCAAGA Cgg     u
-------uucau                       U      A   uaacu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr6: 119069047-119069143 [-]

Disease association
hsa-mir-548b is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-548b-5p

Accession MIMAT0004798
Description Homo sapiens hsa-miR-548b-5p mature miRNA
Sequence 25 - AAAAGUAAUUGUGGUUUUGGCC - 46
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature hsa-miR-548b-3p

Accession MIMAT0003254
Description Homo sapiens hsa-miR-548b-3p mature miRNA
Sequence 61 - CAAGAACCUCAGUUGCUUUUGU - 82
Evidence experimental
SAGE [1], cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16505370
    The colorectal microRNAome
    "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
    "Proc Natl Acad Sci U S A (2006) 103:3687-3692