miRBase entry: hsa-mir-628

Stem-loop hsa-mir-628


Accession
MI0003642
Symbol
HGNC: MIR628
Description
Homo sapiens hsa-mir-628 precursor miRNA
Gene family
MIPF0000529; mir-628

Literature search
32 open access papers mention hsa-mir-628
(80 sentences)

Sequence

8001 reads, 81 reads per million, 105 experiments
auagcuguugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccuUCUAGUAAGAGUGGCAGUCGAagggaagggcucau
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).)).

Structure
auagcugu  u   a      -cAU    A   A             aaaa 
        ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
        || ||| ||||||    |||| ||| |||||||||||||     
        ac cgg gaaggg    UGAC GUG GAAUGAUCUucca    u
-------u  u   -      aAGC    G   A             auaa 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
chr15: 55372940-55373034 [-]

Disease association
hsa-mir-628 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-628-5p

Accession MIMAT0004809
Description Homo sapiens hsa-miR-628-5p mature miRNA
Sequence 23 - AUGCUGACAUAUUUACUAGAGG - 44
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature hsa-miR-628-3p

Accession MIMAT0003297
Description Homo sapiens hsa-miR-628-3p mature miRNA
Sequence 61 - UCUAGUAAGAGUGGCAGUCGA - 81
Evidence experimental
Microarray [1], RT-PCR [1], SAGE [1], cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16505370
    The colorectal microRNAome
    "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
    "Proc Natl Acad Sci U S A (2006) 103:3687-3692