miRBase entry: dre-mir-34b

Stem-loop dre-mir-34b

Accession

MI0003690

Description

Danio rerio dre-mir-34b precursor miRNA mir-34

Gene
family?

RF00456; mir-34

Literature search

10 open access papers mention dre-mir-34b
(36 sentences)

Sequence

211 reads, 39 reads per million, 5 experiments

gggguuggucugUAGGCAGUGUUGUUAGCUGAUUGuuucauaugaacuauaaucacuaaccauacugccaacacaacaaccuaca
.((((((...(((.((((((((.(((((.((((((((((....)))..)))))))))))).)))))))).)))...))))))...

Structure

--g      guc   A        U     C       --   a 
   ggguug   ugU GGCAGUGU GUUAG UGAUUGu  uuc u
   ||||||   ||| |||||||| ||||| |||||||  |||  
   uccaac   aca ccgucaua caauc acuaaua  aag a
aca      aac   a        c     -       uc   u

Annotation confidence Not enough data

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Genome context

chr5: 57922520-57922604 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-34b

Accession	MIMAT0003346
Description	Danio rerio dre-miR-34b mature miRNA
Sequence	13 - UAGGCAGUGUUGUUAGCUGAUUG - 35
Evidence	experimental in-situ [1]
Database links
Predicted targets

References

PubMed ID: 15919954
MicroRNA expression in zebrafish embryonic development
"Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
"Science (2005) 309:310-311