Stem-loop sequence dre-mir-34b

Accession

MI0003690 (change log)

Description

Danio rerio miR-34b stem-loop

Gene family

MIPF0000039; mir-34

Literature search

10 open access papers mention dre-mir-34b
(35 sentences)

Stem-loop

   --g      guc   a        u     c       --   a 
5'    ggguug   ugu ggcagugu guuag ugauugu  uuc u
      ||||||   ||| |||||||| ||||| |||||||  |||  
3'    uccaac   aca ccgucaua caauc acuaaua  aag a
   aca      aac   a        c     -       uc   u 

Deep sequencing

233 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr5: 57922520-57922604 [-]	intergenic
KZ115154.1: 111710-111794 [-]	intergenic

Clustered miRNAs

< 10kb from dre-mir-34b

• dre-mir-34b: chr5: 57922520-57922604 [-]
• dre-mir-34c: chr5: 57922284-57922367 [-]

Database links

• EntrezGene:mir34b
• EntrezGene:mir34b
• RNAcentral:URS000075CEE1_7955
• miRBase Tracker:MI0003690

Mature sequence dre-miR-34b

• Accession: MIMAT0003346
• Sequence: 13 - uaggcaguguuguuagcugauug - 35
• Deep sequencing: 222 reads, 5 experiments
• Evidence: experimental; in-situ [1]
• Database links:
  • RNAcentral:URS000075C116_7955
• Predicted targets:
  • TargetScanFish:dre-miR-34b

References

1. PMID:15919954 "MicroRNA expression in zebrafish embryonic development" Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH Science. 309:310-311(2005).