Stem-loop gga-mir-193b

Accession

MI0003698

Description

Gallus gallus gga-mir-193b precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

5 open access papers mention gga-mir-193b
(9 sentences)

Sequence

2066 reads, 28 reads per million, 5 experiments

gugguuccagaguCGGGGUUUUGGGGGCGAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUUUuggugguca
......((((((.((((((((((.((((.((.(((((....))).....)).)).)))).)))))))))).))))))......

Structure

gugguu      u          G    G  A  -----   u 
      ccagag CGGGGUUUUG GGGC AG UG     Agc u
      |||||| |||||||||| |||| || ||     |||  
      gguUUU GCCCUGAAAC CCCG UC Ac     uug a
acuggu      C          A    G  A  cuauu   u 

Annotation confidence High

Genome context

chr14: 764296-764378 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-193b

Mature gga-miR-193b-3p

• Accession: MIMAT0003353
• Description: Gallus gallus gga-miR-193b-3p mature miRNA
• Sequence: 51 - AACUGGCCCACAAAGUCCCGCUUU - 74
• Evidence: experimental ; Illumina [1]

Mature gga-miR-193b-5p

• Accession: MIMAT0026629
• Description: Gallus gallus gga-miR-193b-5p mature miRNA
• Sequence: 14 - CGGGGUUUUGGGGGCGAGAUGA - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45