miRBase entry: mmu-mir-302d

Stem-loop mmu-mir-302d


Accession
MI0003718
Symbol
MGI: Mir302d
Description
Mus musculus mmu-mir-302d precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
76 open access papers mention mmu-mir-302d
(535 sentences)

Sequence

1214 reads, 93 reads per million, 19 experiments
ccuuuACUUUAACAUGGAGGCACUUGCUgugcauuuaaaaaUAAGUGCUUCCAUGUUUGAGUGUgg
((..(((((.((((((((((((((((...............)))))))))))))))).))))).))

Structure
  uu     U                CUgugc 
cc  uACUU AACAUGGAGGCACUUG      a
||  ||||| ||||||||||||||||      u
gg  GUGAG UUGUACCUUCGUGAAU      u
  -U     U                aaaaau 


Annotation confidence High
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Comments
Mouse miR-302d was verified experimentally by Mineno et al using MPSS technology [1]. The MPSS protocol used provides 22nt sequences, but the true extents of the mature miRNA are not reliably obtained. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context
chr3: 127545624-127545689 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from mmu-mir-302d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-302d-5p

Accession MIMAT0017225
Description Mus musculus mmu-miR-302d-5p mature miRNA
Sequence 6 - ACUUUAACAUGGAGGCACUUGCU - 28
Evidence experimental
Illumina [3]
Database links
Predicted targets

Mature mmu-miR-302d-3p

Accession MIMAT0003377
Description Mus musculus mmu-miR-302d-3p mature miRNA
Sequence 42 - UAAGUGCUUCCAUGUUUGAGUGU - 64
Evidence experimental
MPSS [1], cloned [2], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771