miRBase entry: rno-mir-505

Stem-loop rno-mir-505


Accession
MI0003720
Description
Rattus norvegicus rno-mir-505 precursor miRNA
Gene family
MIPF0000217; mir-505

Literature search
4 open access papers mention rno-mir-505
(9 sentences)

Sequence

28057 reads, 49 reads per million, 490 experiments
aguggGGGAGCCAGGAAGUAUUGAUGUUucugccagguuagcGUCAACACUUGCUGGUUUCCucucu
((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).))

Structure
  u           G    A        -u  g 
ag ggGGGAGCCAG AAGU UUGAUGUU  cu c
|| ||||||||||| |||| ||||||||  ||  
uc cuCCUUUGGUC UUCA AACUGcga  gg c
  u           G    C        uu  a 


Annotation confidence Not enough data
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Genome context
chrX: 143517014-143517080 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-505
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-505-5p

Accession MIMAT0017226
Description Rattus norvegicus rno-miR-505-5p mature miRNA
Sequence 6 - GGGAGCCAGGAAGUAUUGAUGUU - 28
Evidence experimental
SOLiD [2]

Mature rno-miR-505-3p

Accession MIMAT0003380
Description Rattus norvegicus rno-miR-505-3p mature miRNA
Sequence 43 - GUCAACACUUGCUGGUUUCC - 62
Evidence experimental
cloned [1], Northern [1], SOLiD [2]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249