miRBase entry: mmu-mir-301b

Stem-loop mmu-mir-301b


Accession
MI0004122
Symbol
MGI: Mir301b
Description
Mus musculus mmu-mir-301b precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
24 open access papers mention mmu-mir-301b
(57 sentences)

Sequence

16599 reads, 284 reads per million, 91 experiments
uuuccugcuggcugcggguGCUCUGACUAGGUUGCACUACUgugcugugagaagCAGUGCAAUGGUAUUGUCAAAGCaucugggaccagccucgaag
.(((..(((((.(.((((((((.((((...((((((((.....(((......)))))))))))......)))).)))))))).).)))))...))).

Structure
u   -cu     c g        C    ---UAG        ACUgu   gu 
 uuc   gcugg u cggguGCU UGAC      GUUGCACU     gcu  g
 |||   ||||| | |||||||| ||||      ||||||||     |||   
 aag   cgacc g gucuaCGA ACUG      UAACGUGA     Cga  a
g   cuc     a g        A    UUAUGG        -----   ag 


Annotation confidence High
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
chr16: 17124400-17124496 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-301b-5p

Accession MIMAT0017232
Description Mus musculus mmu-miR-301b-5p mature miRNA
Sequence 20 - GCUCUGACUAGGUUGCACUACU - 41
Evidence experimental
Illumina [5]
Database links
Predicted targets

Mature mmu-miR-301b-3p

Accession MIMAT0004186
Description Mus musculus mmu-miR-301b-3p mature miRNA
Sequence 55 - CAGUGCAAUGGUAUUGUCAAAGC - 77
Evidence experimental
miRAP-cloned [1], cloned [2], 454 [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16973894
    Mouse microRNA profiles determined with a new and sensitive cloning method
    "Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H"
    "Nucleic Acids Res (2006) 34:e115

  5. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102