miRBase entry: mmu-mir-374b

Stem-loop mmu-mir-374b


Accession
MI0004125
Symbol
MGI: Mir374b
Description
Mus musculus mmu-mir-374b precursor miRNA
Gene family
MIPF0000288; mir-374

Literature search
18 open access papers mention mmu-mir-374b
(64 sentences)

Sequence

65548 reads, 483 reads per million, 106 experiments
gaagaaauccuacucggguggAUAUAAUACAACCUGCUAAGUGuucuagcacuuagcaGGUUGUAUUAUCAUUGUCCGAGguuauggcucucguc
((.((...((..((((((..((((((((((((((((((((((((....))))))))))))))))))))).))).)))))).....)).))))...

Structure
---  a  aau  ---ua      ug   -                     u 
   ga ga   cc     cucggg  gAU AUAAUACAACCUGCUAAGUGu c
   || ||   ||     ||||||  ||| |||||||||||||||||||||  
   cu cu   gg     GAGCCU  UUA UAUUAUGUUGGacgauucacg u
cug  -  --c  uauug      -G   C                     a 


Annotation confidence High
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Genome context
chrX: 103573060-103573154 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-374b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-374b-5p

Accession MIMAT0003727
Description Mus musculus mmu-miR-374b-5p mature miRNA
Sequence 22 - AUAUAAUACAACCUGCUAAGUG - 43
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-374b-3p

Accession MIMAT0003728
Description Mus musculus mmu-miR-374b-3p mature miRNA
Sequence 59 - GGUUGUAUUAUCAUUGUCCGAG - 80
Evidence experimental
MPSS [1], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771