miRBase entry: mmu-mir-551b

Stem-loop mmu-mir-551b


Accession
MI0004131
Symbol
MGI: Mir551b
Description
Mus musculus mmu-mir-551b precursor miRNA
Gene family
MIPF0000360; mir-551

Literature search
6 open access papers mention mmu-mir-551b
(153 sentences)

Sequence

4838 reads, 175 reads per million, 37 experiments
gugcucuuguggcccauGAAAUCAAGCUUGGGUGAGACCUggugcagaacaggaagGCGACCCAUACUUGGUUUCAGuggcugcaagaaugacugcau
((((((((((((((..((((((((((..(((((....((((........))))......)))))..))))))))))..))))))))))......))))

Structure
    ------          ca          CU     --GAGA    gug 
gugc      ucuuguggcc  uGAAAUCAAG  UGGGU      CCUg   c
||||      ||||||||||  ||||||||||  |||||      ||||    
uacg      agaacgucgg  ACUUUGGUUC  ACCCA      ggac   a
    ucagua          uG          AU     GCGgaa    aag 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context
chr3: 29416823-29416920 [+]

Database links

Mature mmu-miR-551b-5p

Accession MIMAT0017236
Description Mus musculus mmu-miR-551b-5p mature miRNA
Sequence 18 - GAAAUCAAGCUUGGGUGAGACCU - 40
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-551b-3p

Accession MIMAT0003890
Description Mus musculus mmu-miR-551b-3p mature miRNA
Sequence 57 - GCGACCCAUACUUGGUUUCAG - 77
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771