miRBase entry: mmu-mir-668

Stem-loop mmu-mir-668


Accession
MI0004134
Symbol
MGI: Mir668
Description
Mus musculus mmu-mir-668 precursor miRNA
Gene family
MIPF0000357; mir-668

Literature search
6 open access papers mention mmu-mir-668
(31 sentences)

Sequence

11956 reads, 168 reads per million, 67 experiments
gGUAAGUGUGCCUCGGGUGAGCAUGcacuuaauguagguguaUGUCACUCGGCUCGGCCCACUACC
((((.(((.(((((((((((.((((((((((...))))))))))))))))))...))).)))))))

Structure
    A   U   ---        G          a 
gGUA GUG GCC   UCGGGUGA CAUGcacuua  
|||| ||| |||   |||||||| |||||||||| u
CCAU CAC CGG   GGCUCACU GUauguggau  
    -   C   CUC        -          g 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 109734732-109734797 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from mmu-mir-668
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-668-5p

Accession MIMAT0017237
Description Mus musculus mmu-miR-668-5p mature miRNA
Sequence 2 - GUAAGUGUGCCUCGGGUGAGCAUG - 25
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-668-3p

Accession MIMAT0003732
Description Mus musculus mmu-miR-668-3p mature miRNA
Sequence 43 - UGUCACUCGGCUCGGCCCACUACC - 66
Evidence experimental
MPSS [1], cloned [2], RAKE [2], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771

  4. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298