Stem-loop mmu-mir-667

Accession

MI0004196

Symbol

MGI: Mir667

Description

Mus musculus mmu-mir-667 precursor miRNA mir-667

Gene
family

RF03348; mir-667

Literature search

3 open access papers mention mmu-mir-667
(5 sentences)

Sequence

11088 reads, 305 reads per million, 60 experiments

guggguacuggccuCGGUGCUGGUGGAGCAGUGAGCACGccauacauuauaucugUGACACCUGCCACCCAGCCCAAGgccccuaggcccac
((((((...(((((.((.(((((.(..((((....((((..............))))....))))..)))))))).))))).....))))))

Structure

      --acu     C  U     U GA    UGAG    ccauac 
gugggu     ggccu GG GCUGG G  GCAG    CACG      a
||||||     ||||| || ||||| |  ||||    ||||       
cacccg     ccgGA CC CGACC C  CGUC    GUgu      u
      gaucc     A  -     - AC    CACA    cuauau 

Annotation confidence High

Genome context

chr12: 109720006-109720097 [+]

Clustered miRNAs

23 other miRNAs are < 10 kb from mmu-mir-667

Mature mmu-miR-667-5p

• Accession: MIMAT0017239
• Description: Mus musculus mmu-miR-667-5p mature miRNA
• Sequence: 15 - CGGUGCUGGUGGAGCAGUGAGCACG - 39
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-667-3p

• Accession: MIMAT0003734
• Description: Mus musculus mmu-miR-667-3p mature miRNA
• Sequence: 56 - UGACACCUGCCACCCAGCCCAAG - 78
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771


4. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298