miRBase entry: mmu-mir-672

Stem-loop mmu-mir-672


Accession
MI0004258
Symbol
MGI: Mir672
Description
Mus musculus mmu-mir-672 precursor miRNA
Gene family
MIPF0000391; mir-672

Literature search
12 open access papers mention mmu-mir-672
(46 sentences)

Sequence

40389 reads, 222 reads per million, 92 experiments
gauggugaucuagcccuuuaguuuUGAGGUUGGUGUACUGUGUGUGAguauacauauuuaucACACACAGUCACUAUCUUCGAaagugagggugcacauc
(((....)))..((((((((.((((((((.(((((.(((((((((((..(.......)..)))))))))))))))).)))))))).)))))).)).....

Structure
gauggugaucua  -      g        U     U           gu ua 
            gc ccuuua uuuUGAGG UGGUG ACUGUGUGUGA  a  c
            || |||||| |||||||| ||||| |||||||||||  |  a
            cg gggagu aaAGCUUC AUCAC UGACACACAcu  u  u
-------cuaca  u      g        U     -           au ua 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context
chrX: 104116175-104116274 [-]

Database links

Mature mmu-miR-672-5p

Accession MIMAT0003735
Description Mus musculus mmu-miR-672-5p mature miRNA
Sequence 25 - UGAGGUUGGUGUACUGUGUGUGA - 47
Evidence experimental
MPSS [1], cloned [2-3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-672-3p

Accession MIMAT0017241
Description Mus musculus mmu-miR-672-3p mature miRNA
Sequence 63 - ACACACAGUCACUAUCUUCGA - 83
Evidence experimental
Illumina [5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771

  5. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298