Stem-loop mmu-mir-666

Accession

MI0004553

Symbol

MGI: Mir666

Description

Mus musculus mmu-mir-666 precursor miRNA mir-666

Gene
family

RF03211; mir-666

Literature search

4 open access papers mention mmu-mir-666
(5 sentences)

Sequence

12453 reads, 217 reads per million, 66 experiments

cugauucugccugcguggAGCGGGCACAGCUGUGAGAGCCcccuagguacagcggGGCUGCAGCGUGAUCGCCUGCUcacgcacaggaagugacgacag
......((.((((.(((((((((((.(((((((...((((((((......)).))))))))))).))...)))))))).))).)))).)).........

Structure

---cugauu  g    c   -        --A  -     GAG      -  ag 
         cu ccug gug gAGCGGGC   CA GCUGU   AGCCcc cu  g
         || |||| ||| ||||||||   || |||||   |||||| ||   
         ga ggac cgc cUCGUCCG   GU CGACG   UCGGgg ga  u
gacagcagu  a    a   a        CUA  G     ---      c  ca 

Annotation confidence High

Genome context

chr12: 109717085-109717183 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from mmu-mir-666

Mature mmu-miR-666-5p

• Accession: MIMAT0003737
• Description: Mus musculus mmu-miR-666-5p mature miRNA
• Sequence: 19 - AGCGGGCACAGCUGUGAGAGCC - 40
• Evidence: experimental ; MPSS [1], cloned [2-3], Illumina [4-5]

Mature mmu-miR-666-3p

• Accession: MIMAT0004823
• Description: Mus musculus mmu-miR-666-3p mature miRNA
• Sequence: 56 - GGCUGCAGCGUGAUCGCCUGCU - 77
• Evidence: experimental ; cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771


5. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298