miRBase entry: mmu-mir-423

Stem-loop mmu-mir-423


Accession
MI0004637
Symbol
MGI: Mir423
Description
Mus musculus mmu-mir-423 precursor miRNA
Gene family
MIPF0000329; mir-423

Literature search
34 open access papers mention mmu-mir-423
(142 sentences)

Sequence

1849049 reads, 5149 reads per million, 108 experiments
acuugugaggaaauaaaggaaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuaccccgcgcuug
....(((.((......(((((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))))...)).)))...

Structure
acuu   a  aaauaa       u            -AG   G    A     cua 
    gug gg      aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
    ||| ||      ||||||| ||||||||||||   ||| |||| |||||   u
    cgc cc      uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
-guu   g  ---cca       u            GAG   G    -     ccu 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
chr11: 77078064-77078172 [-]

Database links

Mature mmu-miR-423-5p

Accession MIMAT0004825
Description Mus musculus mmu-miR-423-5p mature miRNA
Sequence 29 - UGAGGGGCAGAGAGCGAGACUUU - 51
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-423-3p

Accession MIMAT0003454
Description Mus musculus mmu-miR-423-3p mature miRNA
Sequence 65 - AGCUCGGUCUGAGGCCCCUCAGU - 87
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771