Stem-loop mmu-mir-679

Accession

MI0004638

Symbol

MGI: Mir679

Description

Mus musculus mmu-mir-679 precursor miRNA

Gene family

MIPF0001564; mir-679

Literature search

1 open access papers mention mmu-mir-679
(4 sentences)

Sequence

3254 reads, 60 reads per million, 46 experiments

cuauggcuuuGGACUGUGAGGUGACUCUUGGUgugugauggcuuuucAGCAAGGUCCUCCUCACAGUAGcuaua
.(((((((....(((((((((.(((.((((.((.............)).)))))))..))))))))))))))))

Structure

c       uuGG         -U   U    G  uguga 
 uauggcu    ACUGUGAGG  GAC CUUG Ug     u
 |||||||    |||||||||  ||| |||| ||     g
 auaucGA    UGACACUCC  CUG GAAC Ac     g
-       ----         UC   -    G  uuuuc 

Annotation confidence High

Genome context

chr12: 109715577-109715650 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from mmu-mir-679

Mature mmu-miR-679-5p

• Accession: MIMAT0003455
• Description: Mus musculus mmu-miR-679-5p mature miRNA
• Sequence: 11 - GGACUGUGAGGUGACUCUUGGU - 32
• Evidence: experimental ; MPSS [1], Illumina [2-3]

Mature mmu-miR-679-3p

• Accession: MIMAT0017248
• Description: Mus musculus mmu-miR-679-3p mature miRNA
• Sequence: 48 - AGCAAGGUCCUCCUCACAGUAG - 69
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771