Stem-loop sequence mmu-mir-680-2

Accession

MI0004641 (change log)

Symbol

MGI:Mir680-2

Description

Mus musculus miR-680-2 stem-loop

Gene family

MIPF0000338; mir-680

Literature search

8 open access papers mention mmu-mir-680-2
(11 sentences)

Stem-loop

       a  u  -    -a g     cgaa      c cc   c     gcac  ug  uc 
5' gggc uc gc ugac  u ggggc    gucagg g  agg aucgg    uc  ga  u
   |||| || || ||||  | |||||    |||||| |  ||| |||||    ||  ||  u
3' cucg gg cg acug  g uuccg    caguuc c  ucc uaguu    ag  cu  a
       -  u  g    gg g     ---a      - --   -     -aca  gu  cu 

Deep sequencing

128 reads, 7.14 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 144297790-144297899 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir680-2
• MGI:Mir680-2
• miRBase Tracker:MI0004641

Mature sequence mmu-miR-680

• Accession: MIMAT0003457
• Sequence: 1 - gggcaucugcugacauggggg - 21
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; MPSS [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-680
  • miRDB:mmu-miR-680
  • microrna.org:mmu-miR-680

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).