miRBase entry: mmu-mir-680-2

Stem-loop mmu-mir-680-2


Accession
MI0004641
Symbol
MGI: Mir680-2
Description
Mus musculus mmu-mir-680-2 precursor miRNA
Gene family
MIPF0000338; mir-680

Literature search
8 open access papers mention mmu-mir-680-2
(12 sentences)

Sequence

46 reads, 136 reads per million, 13 experiments
GGGCAUCUGCUGACAUGGGGGccgaagucaggcgccaggcaucgggcacucuggaucuuaucucuggaacauugauccuccuugacagccuugggggucaggcugggcuc
((((.....(((((.(.(((((....((((((.(..(((.(((((....((((((.......))))))...))))))))))))))).))))).)..))))).....))))

Structure
    AUCUG     -A G     cgaa      c cc   c     gcac      uc 
GGGC     CUGAC  U GGGGc    gucagg g  agg aucgg    ucugga  u
||||     |||||  | |||||    |||||| |  ||| |||||    ||||||  u
cucg     gacug  g uuccg    caguuc c  ucc uaguu    aggucu  a
    ggucg     gg g     ---a      - --   -     -aca      cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 144297790-144297899 [+]

Database links

Mature mmu-miR-680

Accession MIMAT0003457
Description Mus musculus mmu-miR-680 mature miRNA
Sequence 1 - GGGCAUCUGCUGACAUGGGGG - 21
Evidence experimental
MPSS [1]

References

  1. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771