miRBase entry: mmu-mir-146b

Stem-loop mmu-mir-146b


Accession
MI0004665
Symbol
MGI: Mir146b
Description
Mus musculus mmu-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
188 open access papers mention mmu-mir-146b
(1119 sentences)

Sequence

670009 reads, 1704 reads per million, 105 experiments
gacugagagaacuuuggccaccuggcucUGAGAACUGAAUUCCAUAGGCUgugagcucuagcagacGCCCUAGGGACUCAGUUCUGGUgcccggcugugcuauaccauc
..............((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).)))).......

Structure
gacugagagaacuu    -  -  u   u  G        A    A    C   ga  u 
              uggc ca cc ggc cU AGAACUGA UUCC UAGG Ugu  gc c
              |||| || || ||| || |||||||| |||| |||| |||  ||  
              aucg gu gg ccg GG UCUUGACU AGGG AUCC Gca  cg u
-------cuaccau    u  c  c   U  -        C    -    C   ga  a 


Annotation confidence High
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Genome context
chr19: 46342762-46342870 [+]

Database links

Mature mmu-miR-146b-5p

Accession MIMAT0003475
Description Mus musculus mmu-miR-146b-5p mature miRNA
Sequence 29 - UGAGAACUGAAUUCCAUAGGCU - 50
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-146b-3p

Accession MIMAT0004826
Description Mus musculus mmu-miR-146b-3p mature miRNA
Sequence 67 - GCCCUAGGGACUCAGUUCUGGU - 88
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771