miRBase entry: mmu-mir-669b

Stem-loop mmu-mir-669b


Accession
MI0004666
Symbol
MGI: Mir669b
Description
Mus musculus mmu-mir-669b precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
14 open access papers mention mmu-mir-669b
(18 sentences)

Sequence

2821 reads, 247 reads per million, 91 experiments
augaauguaugugcauguguauauAGUUUUGUGUGCAUGUGCAUGUgugucuauuaauguaCAUAUACAUACACACAAACAUAUacacgcaugcgca
.........(((((((((((.((((..((((((((.(((((.((((((((......)))))))).))))).))))))))..)))).)))))))))))

Structure
augaaugua           a    GU        C     C        cu 
         ugugcaugugu uauA  UUUGUGUG AUGUG AUGUgugu  a
         ||||||||||| ||||  |||||||| ||||| ||||||||   
         acgcguacgca aUAU  AAACACAC UACAU UACaugua  u
---------           c    AC        A     A        au 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2: 10467790-10467886 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from mmu-mir-669b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669b-5p

Accession MIMAT0003476
Description Mus musculus mmu-miR-669b-5p mature miRNA
Sequence 25 - AGUUUUGUGUGCAUGUGCAUGU - 46
Evidence experimental
MPSS [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-669b-3p

Accession MIMAT0017250
Description Mus musculus mmu-miR-669b-3p mature miRNA
Sequence 62 - CAUAUACAUACACACAAACAUAU - 84
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771