miRBase entry: mmu-mir-467b

Stem-loop mmu-mir-467b


Accession
MI0004671
Symbol
MGI: Mir467b
Description
Mus musculus mmu-mir-467b precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
24 open access papers mention mmu-mir-467b
(88 sentences)

Sequence

65979 reads, 580 reads per million, 101 experiments
ccgugugcGUAAGUGCCUGCAUGUAUAUGcguguauauuuuaugcAUAUACAUACACACACCAACACacacau
..(((((.((..(((..((.(((((((((((((.......))))))))))))).))..)))..)).)))))..

Structure
cc     c  AA   CC  C             ua 
  gugug GU  GUG  UG AUGUAUAUGcgug  u
  ||||| ||  |||  || |||||||||||||  a
  cacaC CA  CAC  AC UACAUAUAcguau  u
ua     A  AC   AC  A             uu 


Annotation confidence High
Do you think this miRNA is real?
Comments
The sequence of miR-467 is of low complexity. The sequence maps exactly to several genomic positions, and many more with 1 or 2 substitutions. Confidence in this miRNA might therefore be reduced.

Genome context
chr2: 10481248-10481320 [+]
Clustered miRNAs
28 other miRNAs are < 10 kb from mmu-mir-467b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-467b-5p

Accession MIMAT0005448
Description Mus musculus mmu-miR-467b-5p mature miRNA
Sequence 9 - GUAAGUGCCUGCAUGUAUAUG - 29
Evidence experimental
MPSS [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-467b-3p

Accession MIMAT0003478
Description Mus musculus mmu-miR-467b-3p mature miRNA
Sequence 46 - AUAUACAUACACACACCAACAC - 67
Evidence experimental
Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771