Stem-loop sequence mmu-mir-491

Accession

MI0004680 (change log)

Symbol

MGI:Mir491

Description

Mus musculus miR-491 stem-loop

Gene family

MIPF0000319; mir-491

Literature search

17 open access papers mention mmu-mir-491
(140 sentences)

Stem-loop

   aa ug      cu   a  u      cc   c          a 
5'   u  acuuag  ggg ag ggggaa  cuu caugaggagu g
     |  ||||||  ||| || ||||||  ||| |||||||||| a
3'   a  ugaguc  ucc uc ucccuu  gaa guauuccuca a
   -- gu      ag   a  u      -a   c          c 

Deep sequencing

1570 reads, 0 reads per million, 85 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr4: 88122040-88122125 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000086963 ; RP23-300P20.4-009; intron 1

  OTTMUST00000086962 ; RP23-300P20.4-008; intron 2

  OTTMUST00000026608 ; RP23-300P20.4-001; intron 2

  ENSMUST00000159342 ; Focad-009; intron 1

  ENSMUST00000097992 ; Focad-001; intron 2

  ENSMUST00000161058 ; Focad-008; intron 2

Database links

• EntrezGene:Mir491
• MGI:Mir491
• RNAcentral:URS000075A67B_10090
• miRBase Tracker:MI0004680

Mature sequence mmu-miR-491-5p

• Accession: MIMAT0003486
• Previous IDs: mmu-miR-491
• Sequence: 18 - aguggggaacccuuccaugagg - 39
• Deep sequencing: 1428 reads, 77 experiments
• Evidence: experimental; MPSS [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00001919B0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-491-5p
  • miRDB:mmu-miR-491-5p
  • microrna.org:mmu-miR-491-5p

Mature sequence mmu-miR-491-3p

• Accession: MIMAT0017255
• Previous IDs: mmu-miR-491*
• Sequence: 52 - cuuaugcaagauucccuucuac - 73
• Deep sequencing: 138 reads, 48 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000202B65_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-491-3p
  • miRDB:mmu-miR-491-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).