Stem-loop mmu-mir-501

Accession

MI0004703

Symbol

MGI: Mir501

Description

Mus musculus mmu-mir-501 precursor miRNA mir-500

Gene
family

RF01903; mir-500

Literature search

12 open access papers mention mmu-mir-501
(76 sentences)

Sequence

42904 reads, 152 reads per million, 104 experiments

cuucugcucugcucauccucucuAAUCCUUUGUCCCUGGGUGAAAaugcuauuuguaugcAAUGCACCCGGGCAAGGAUUUGgggaaggugagccugaucugcauggag
(((((((((.(((((((.(((((((..(((((.(((.(((((....(((.........)))...)))))))))))))..))))))).)))))))..))...))).))))

Structure

    -   ---  -u       c       UC     U   U     AAAa   uau 
cuuc ugc   uc  gcucauc ucucuAA  CUUUG CCC GGGUG    ugc   u
|||| |||   ||  ||||||| |||||||  ||||| ||| |||||    |||   u
gagg acg   ag  cgagugg agggGUU  GGAAC GGG CCCAC    Acg   g
    u   ucu  uc       a       UA     -   -     -GUA   uau 

Annotation confidence Medium

Genome context

chrX: 7241243-7241351 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mmu-mir-501

Mature mmu-miR-501-5p

• Accession: MIMAT0003508
• Description: Mus musculus mmu-miR-501-5p mature miRNA
• Sequence: 24 - AAUCCUUUGUCCCUGGGUGAAA - 45
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-501-3p

• Accession: MIMAT0003509
• Description: Mus musculus mmu-miR-501-3p mature miRNA
• Sequence: 61 - AAUGCACCCGGGCAAGGAUUUG - 82
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771