miRBase entry: bta-mir-148a

Stem-loop bta-mir-148a


Accession
MI0004737
Description
Bos taurus bta-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
33 open access papers mention bta-mir-148a
(203 sentences)

Sequence

1263230 reads, 20563 reads per million, 78 experiments
gaggcaaaguucugagacacuccgacucugaauaugauagaagUCAGUGCACUACAGAACUUUGUcuc
((((((((((((((((.((((..(((((((.......))).))))))))..)).))))))))))))))

Structure
              -  -a    cc    -   aa 
gaggcaaaguucug ag  cacu  gacu cug  u
|||||||||||||| ||  ||||  |||| |||  a
cucUGUUUCAAGAC UC  GUGA  CUga gau  u
              A  AC    --    a   ag 


Annotation confidence High
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Genome context
chr4: 70663557-70663624 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-148a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-148a

Accession MIMAT0003522
Description Bos taurus bta-miR-148a mature miRNA
Sequence 44 - UCAGUGCACUACAGAACUUUGU - 65
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343