Stem-loop sequence bta-mir-221

Accession

MI0004743 (change log)

Description

Bos taurus miR-221 stem-loop

Gene family

MIPF0000051; mir-221

Literature search

22 open access papers mention bta-mir-221
(59 sentences)

Stem-loop

   -----ccaaca       cuag   a    -  ug   u         auuu    -      
5'            uccaggu    ggc ugaa cc  gca acaauguag    cugu guuug 
              |||||||    ||| |||| ||  ||| |||||||||    |||| |||| u
3'            aggucca    ucg acuu gg  cgu uguuacauc    gaca cgagu 
   uucuugcacaa       ----   g    u  gu   c         ----    a      

Deep sequencing

136716 reads, 697 reads per million, 72 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 104688654-104688763 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-221

• bta-mir-222: chrX: 104687960-104688069 [+]
• bta-mir-221: chrX: 104688654-104688763 [+]

Database links

• EntrezGene:MIR221
• RNAcentral:URS000075B5EA_9913
• miRBase Tracker:MI0004743

Mature sequence bta-miR-221

• Accession: MIMAT0003529
• Sequence: 65 - agcuacauugucugcuggguuu - 86
• Deep sequencing: 127010 reads, 72 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-221

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).