Stem-loop sequence bta-mir-222

Accession

MI0004744 (change log)

Description

Bos taurus miR-222 stem-loop

Gene family

MIPF0000051; mir-221

Literature search

21 open access papers mention bta-mir-222
(62 sentences)

Stem-loop

   gcugcu  aau ugu    a  c   au              -     auc   ucuu 
5'       gg   g   aggu cc uca  ggcucaguagccag uguag   cug    u
         ||   |   |||| || |||  |||||||||||||| |||||   |||    u
3'       cc   c   ucua gg agu  cugggucaucgguc acauc   gac    g
   -----u  -au --u    c  u   cu              u     gau   uaau 

Deep sequencing

56061 reads, 277 reads per million, 69 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 104687960-104688069 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-222

• bta-mir-222: chrX: 104687960-104688069 [+]
• bta-mir-221: chrX: 104688654-104688763 [+]

Database links

• EntrezGene:MIR222
• RNAcentral:URS0000759F6A_9913
• miRBase Tracker:MI0004744

Mature sequence bta-miR-222

• Accession: MIMAT0003530
• Sequence: 69 - agcuacaucuggcuacugggu - 89
• Deep sequencing: 55992 reads, 69 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-222

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).