miRBase entry: bta-mir-99a

Stem-loop bta-mir-99a


Accession
MI0004751
Description
Bos taurus bta-mir-99a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
22 open access papers mention bta-mir-99a
(44 sentences)

Sequence

42058 reads, 1583 reads per million, 76 experiments
cccauuggcauaAACCCGUAGAUCCGAUCUUGUggugaaguggaccgcaCAAGCUCGCUUCUAUGGGUcugugucagugug
..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure
cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUg ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu UGGGUAUCU  GCU GAACac gc   g
gu          c         UC   C      -  cag 


Annotation confidence High
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Genome context
chr1: 19985570-19985650 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-99a-5p

Accession MIMAT0003537
Description Bos taurus bta-miR-99a-5p mature miRNA
Sequence 13 - AACCCGUAGAUCCGAUCUUGU - 33
Evidence experimental
cloned [1], Array [2], qRT-PCR [2]

Mature bta-miR-99a-3p

Accession MIMAT0012533
Description Bos taurus bta-miR-99a-3p mature miRNA
Sequence 50 - CAAGCUCGCUUCUAUGGGU - 68
Evidence experimental
cloned [3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677