miRBase entry: bta-mir-126

Stem-loop bta-mir-126


Accession
MI0004754
Description
Bos taurus bta-mir-126 precursor miRNA
Gene family
MIPF0000115; mir-126

Literature search
22 open access papers mention bta-mir-126
(159 sentences)

Sequence

494025 reads, 6131 reads per million, 64 experiments
ugacgggaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacuCGUACCGUGAGUAAUAAUGCGcuguca
((((((..(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..))))))

Structure
      ga           U       CGcug   c 
ugacgg  CAUUAUUACUU UGGUACG     uga a
||||||  ||||||||||| |||||||     |||  
acuguc  GUAAUAAUGAG GCCAUGC     acu c
      GC           U       -ucaa   u 


Annotation confidence High
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Genome context
chr11: 104385546-104385618 [+]

Database links

Mature bta-miR-126-5p

Accession MIMAT0004328
Description Bos taurus bta-miR-126-5p mature miRNA
Sequence 9 - CAUUAUUACUUUUGGUACGCG - 29
Evidence experimental
cloned [2]

Mature bta-miR-126-3p

Accession MIMAT0003540
Description Bos taurus bta-miR-126-3p mature miRNA
Sequence 47 - CGUACCGUGAGUAAUAAUGCG - 67
Evidence experimental
cloned [1-3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343