miRBase entry: bta-mir-181a-2

Stem-loop bta-mir-181a-2


Accession
MI0004757
Description
Bos taurus bta-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
33 open access papers mention bta-mir-181a-2
(245 sentences)

Sequence

795630 reads, 8671 reads per million, 78 experiments
ugccagggccaggacccagucuucagaggacuccaaggAACAUUCAACGCUGUCGGUGAGUUugggauuugaaaaaaccaccgaccguugacuguaccuuggguuccuua
.....(((......)))........(((((.(((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))))).))))).

Structure
ugccagggccaggacccagucuuca     c       A   U      CU       A    ggga 
                         gagga uccaagg ACA UCAACG  GUCGGUG GUUu    u
                         ||||| ||||||| ||| ||||||  ||||||| ||||    u
                         uuccu ggguucc ugu aguugc  cagccac caaa    u
------------------------a     u       a   c      --       -    aaag 


Annotation confidence Not enough data
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Genome context
chr11: 95966066-95966175 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-181a

Accession MIMAT0003543
Description Bos taurus bta-miR-181a mature miRNA
Sequence 39 - AACAUUCAACGCUGUCGGUGAGUU - 62
Evidence experimental
cloned [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103