miRBase entry: bta-mir-27b

Stem-loop bta-mir-27b


Accession
MI0004760
Description
Bos taurus bta-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
35 open access papers mention bta-mir-27b
(112 sentences)

Sequence

2059139 reads, 20982 reads per million, 78 experiments
accucucugacgaggugcagagcuuagcugauuggugaacagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggug
((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).)))).

Structure
-    -    gacg                 g    g       ugac   u 
 accu cucu    aggugcagagcuuagcu auug ugaacag    ugg  
 |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
 ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
g    a    --ag                 -    -       --uc   u 


Annotation confidence High
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Genome context
chr8: 83483816-83483912 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from bta-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-27b

Accession MIMAT0003546
Description Bos taurus bta-miR-27b mature miRNA
Sequence 61 - UUCACAGUGGCUAAGUUCUGC - 81
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988