miRBase entry: bta-mir-34b

Stem-loop bta-mir-34b


Accession
MI0004763
Description
Bos taurus bta-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
9 open access papers mention bta-mir-34b
(64 sentences)

Sequence

58 reads, 11 reads per million, 29 experiments
gugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGuacucucaugcuuacaaucacuaguuccacugccaucaaaacaaggcac
(((((..((((...(((((((.((((((.((((((((..(....)..)))))))))))))).)))))))....))))..)))))

Structure
     cg    -guA       U      C        cu u 
gugcu  guuu    GGCAGUG AAUUAG UGAUUGua  c c
|||||  ||||    ||||||| |||||| ||||||||  |  
cacgg  caaa    ccgucac uugauc acuaacau  g a
     aa    acua       c      -        uc u 


Annotation confidence High
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Genome context
chr15: 22281681-22281764 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-34b

Accession MIMAT0003549
Description Bos taurus bta-miR-34b mature miRNA
Sequence 14 - AGGCAGUGUAAUUAGCUGAUUG - 35
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43