Stem-loop sequence dre-mir-34c

Accession

MI0004774 (change log)

Description

Danio rerio miR-34c stem-loop

Gene family

MIPF0000039; mir-34

Literature search

10 open access papers mention dre-mir-34c
(32 sentences)

Stem-loop

        u  gg     a  c    ca      u      aauc 
5' ugcug gu  ucacc gg agug  guuagu gauuac    c
   ||||| ||  ||||| || ||||  |||||| ||||||     
3' augau cg  agugg cc ucac  caauca cuaaug    a
        -  ga     a  a    uc      -      aaau 

Deep sequencing

567 reads, 33.3 reads per million, 6 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr5: 57922284-57922367 [-]	intergenic
KZ115154.1: 111474-111557 [-]	intergenic

Clustered miRNAs

< 10kb from dre-mir-34c

• dre-mir-34b: chr5: 57922520-57922604 [-]
• dre-mir-34c: chr5: 57922284-57922367 [-]

Database links

• EntrezGene:mir34c
• EntrezGene:mir34c
• RNAcentral:URS000075E8B0_7955
• miRBase Tracker:MI0004774

Mature sequence dre-miR-34c-5p

• Accession: MIMAT0003759
• Previous IDs: dre-miR-34c
• Sequence: 16 - aggcagugcaguuaguugauuac - 38
• Deep sequencing: 520 reads, 5 experiments
• Evidence: experimental; cloned [1], in-situ [1], Northern [1]
• Database links:
  • RNAcentral:URS000075C38D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-34c

Mature sequence dre-miR-34c-3p

• Accession: MIMAT0032011
• Sequence: 51 - aaucacuaaccucacuaccagg - 72
• Deep sequencing: 47 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000783BF1_7955

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).