miRBase entry: dre-mir-34c

Stem-loop dre-mir-34c


Accession
MI0004774
Description
Danio rerio dre-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
10 open access papers mention dre-mir-34c
(33 sentences)

Sequence

478 reads, 89 reads per million, 5 experiments
ugcuguguggucaccAGGCAGUGCAGUUAGUUGAUUACaauccauaaaguAAUCACUAACCUCACUACCAGGugaaggcuagua
(((((.((..(((((.((.((((..((((((.((((((..........))))))))))))..)))).)).)))))..)))))))

Structure
     u  gg     A  C    CA      U      aauc 
ugcug gu  ucacc GG AGUG  GUUAGU GAUUAC    c
||||| ||  ||||| || ||||  |||||| ||||||     
augau cg  aguGG CC UCAC  CAAUCA CUAAug    a
     -  ga     A  A    UC      -      aaau 


Annotation confidence High
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Genome context
chr5: 57922284-57922367 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-34c-5p

Accession MIMAT0003759
Description Danio rerio dre-miR-34c-5p mature miRNA
Sequence 16 - AGGCAGUGCAGUUAGUUGAUUAC - 38
Evidence experimental
cloned [1], in-situ [1], Northern [1]
Database links
Predicted targets

Mature dre-miR-34c-3p

Accession MIMAT0032011
Description Danio rerio dre-miR-34c-3p mature miRNA
Sequence 51 - AAUCACUAACCUCACUACCAGG - 72
Evidence not_experimental
Database links

References

  1. PubMed ID: 16698962
    Cloning and expression of new microRNAs from zebrafish
    "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
    "Nucleic Acids Res (2006) 34:2558-2569