Stem-loop xtr-mir-9a-2

Accession

MI0004794

Description

Xenopus tropicalis xtr-mir-9a-2 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

1 open access papers mention xtr-mir-9a-2
(1 sentences)

Sequence

ggaagugguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguauugguuuucaUAAAGCUAGAUAACCGAAAGUaaaaacuccuuc
.((((.((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))).))))

Structure

g    u    g    C               G      ugua 
 gaag gguu uuaU UUUGGUUAUCUAGCU UAUGAg    u
 |||| |||| |||| ||||||||||||||| ||||||     
 cuuc ucaa aaUG AAGCCAAUAGAUCGA AUacuu    u
-    c    a    A               A      uugg 

Annotation confidence Not enough data

Genome context

chr1: 170225657-170225741 [-]

Mature xtr-miR-9a-3p

• Accession: MIMAT0003554
• Description: Xenopus tropicalis xtr-miR-9a-3p mature miRNA
• Sequence: 53 - UAAAGCUAGAUAACCGAAAGU - 73
• Evidence: experimental ; Northern [1]

Mature xtr-miR-9a-5p

• Accession: MIMAT0003553
• Description: Xenopus tropicalis xtr-miR-9a-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112