miRBase entry: xtr-mir-133a

Stem-loop xtr-mir-133a

Accession

MI0004962

Description

Xenopus tropicalis xtr-mir-133a precursor miRNA

Gene family

MIPF0000029; mir-133

Sequence

caaugcuuugcuaaagcugguaaaauggaaccaaaucaccucuucaauggauUUGGUCCCCUUCAACCAGCUGUaggauugcauug
((((((..(.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)..))))))

Structure

      uu g   a       aa  u  a        accuc 
caaugc  u cua agcuggu  aa gg accaaauc     u
||||||  | ||| |||||||  || || ||||||||      
guuacg  a gaU UCGACCA  UU CC UGGUUuag     u
      uu g   G       AC  C  C        guaac

Annotation confidence Not enough data

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Genome context

chr6: 93550858-93550943 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-133a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-133a

Accession	MIMAT0003708
Description	Xenopus tropicalis xtr-miR-133a mature miRNA
Sequence	53 - UUGGUCCCCUUCAACCAGCUGU - 74
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112