miRBase entry: mmu-mir-676

Stem-loop mmu-mir-676


Accession
MI0005003
Symbol
MGI: Mir676
Description
Mus musculus mmu-mir-676 precursor miRNA
Gene family
MIPF0000471; mir-676

Literature search
7 open access papers mention mmu-mir-676
(14 sentences)

Sequence

56586 reads, 186 reads per million, 94 experiments
cuuugccugaaugcaugACUCUACAACCUUAGGACUUGCagaauuaaaggaaugCCGUCCUGAGGUUGUUGAGCUgugcguuucugggc
....(((((((((((((.(((.(((((((((((((..(((............))).))))))))))))).))).)))))))))..))))

Structure
cuuu    --         A   U             UU   gaauu 
    gccu  gaaugcaug CUC ACAACCUUAGGAC  GCa     a
    ||||  ||||||||| ||| |||||||||||||  |||      
    cggg  uuugcgugU GAG UGUUGGAGUCCUG  Cgu     a
----    uc         C   U             -C   aagga 


Annotation confidence High
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Genome context
chrX: 100381097-100381185 [+]

Database links

Mature mmu-miR-676-5p

Accession MIMAT0003781
Description Mus musculus mmu-miR-676-5p mature miRNA
Sequence 18 - ACUCUACAACCUUAGGACUUGC - 39
Evidence experimental
MPSS [1], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-676-3p

Accession MIMAT0003782
Description Mus musculus mmu-miR-676-3p mature miRNA
Sequence 55 - CCGUCCUGAGGUUGUUGAGCU - 75
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  3. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771

  4. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298