miRBase entry: bta-mir-10a

Stem-loop bta-mir-10a


Accession
MI0005007
Description
Bos taurus bta-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
14 open access papers mention bta-mir-10a
(35 sentences)

Sequence

2598172 reads, 29380 reads per million, 70 experiments
gaucugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuugugaucacaaauucguaucuaggggaauauguaguugacauaaacacuccgcuc
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...)))........

Structure
----gauc   --c    uu        A    G     C          uaaggaa 
        ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
        |||   ||||  |||||||| |||| ||||| ||||||||||        
        aca   acag  gauguaua gggg aucua gcuuaaacac       u
cucgccuc   aau    uu        a    -     u          uaguguu 


Annotation confidence High
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Genome context
chr19: 38713901-38714009 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-10a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-10a

Accession MIMAT0003786
Description Bos taurus bta-miR-10a mature miRNA
Sequence 22 - UACCCUGUAGAUCCGAAUUUGUG - 44
Evidence experimental
cloned [1], Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677