miRBase entry: bta-mir-127

Stem-loop bta-mir-127


Accession
MI0005008
Description
Bos taurus bta-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127

Literature search
14 open access papers mention bta-mir-127
(144 sentences)

Sequence

701921 reads, 7470 reads per million, 65 experiments
ugaucacugucuccagccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucggaagucuccucauc
.(((..(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))..)))........

Structure
-------u   ca   ucu      ugcug         g  c      --  a 
        gau  cug   ccagcc     aagcucaga gg ucugau  uc g
        |||  |||   ||||||     ||||||||| || ||||||  || a
        cug  ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
cuacuccu   aa   --u      -----         G  U      cu  a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr21: 67708504-67708598 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-127
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-127

Accession MIMAT0003787
Description Bos taurus bta-miR-127 mature miRNA
Sequence 55 - UCGGAUCCGUCUGAGCUUGGCU - 76
Evidence experimental
cloned [1], Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677