miRBase entry: bta-mir-142

Stem-loop bta-mir-142


Accession
MI0005011
Description
Bos taurus bta-mir-142 precursor miRNA
Gene family
MIPF0000084; mir-142

Literature search
16 open access papers mention bta-mir-142
(76 sentences)

Sequence

304949 reads, 4912 reads per million, 75 experiments
gacagugcagucaccCAUAAAGUAGAAAGCACUACuaacagcacuggaggguguAGUGUUUCCUACUUUAUGGAUGaguguacugug
.((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).)))))))).

Structure
g        g   c           A         uaa ag a 
 acagugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 |||||||| ||| ||||||||||| |||||||||   |  |  
 ugucaugu aGU GGUAUUUCAUC UUUGUGAug   g  g u
g        g   A           C         -ug ga g 


Annotation confidence Not enough data
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Comments
In addition to the mature miR-142 sequence shown here, Gu et al. also cloned the offset sequence CCCAUAAAGUAGAAAGCACUA just once [2]. This sequence aligns with that cloned in chicken (MIR:MI0001281).

Genome context
chr19: 9627413-9627499 [-]

Database links

Mature bta-miR-142-5p

Accession MIMAT0003790
Description Bos taurus bta-miR-142-5p mature miRNA
Sequence 16 - CAUAAAGUAGAAAGCACUAC - 35
Evidence experimental
cloned [2]

Mature bta-miR-142-3p

Accession MIMAT0003791
Description Bos taurus bta-miR-142-3p mature miRNA
Sequence 55 - AGUGUUUCCUACUUUAUGGAUG - 76
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988